PaDuA
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PaDuA
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Index
A
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B
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C
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E
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F
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G
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H
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K
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M
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N
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P
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Q
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R
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S
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T
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V
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W
A
anova_1way() (in module padua.analysis)
apply_experimental_design() (in module padua.process)
B
box() (in module padua.visualize)
build_combined_label() (in module padua.utils)
build_index_from_design() (in module padua.process)
build_index_from_labels() (in module padua.process)
C
calculate_s0_curve() (in module padua.utils)
chunks() (in module padua.utils)
column_correlations() (in module padua.visualize)
combine_expression_columns() (in module padua.process)
comparedist() (in module padua.visualize)
correlation() (in module padua.analysis)
(in module padua.visualize)
E
enrichment() (in module padua.visualize)
enrichment_from_evidence() (in module padua.analysis)
enrichment_from_msp() (in module padua.analysis)
expand_side_table() (in module padua.process)
F
filter_exclude() (in module padua.filters)
filter_intensity() (in module padua.filters)
filter_intensity_lfq() (in module padua.filters)
filter_localization_probability() (in module padua.filters)
filter_select_columns() (in module padua.filters)
find_nearest_idx() (in module padua.utils)
fold_columns_to_rows() (in module padua.process)
G
gaussian() (in module padua.imputation)
get_index_list() (in module padua.utils)
get_protein_id() (in module padua.utils)
get_protein_id_list() (in module padua.utils)
get_protein_ids() (in module padua.utils)
get_shortstr() (in module padua.utils)
get_unique_indices() (in module padua.process)
go_enrichment() (in module padua.analysis)
H
hierarchical() (in module padua.visualize)
hierarchical_match() (in module padua.utils)
K
kegg_pathway() (in module padua.visualize)
M
minimum_valid_values_in_any_group() (in module padua.filters)
modificationlocalization() (in module padua.visualize)
modifiedaminoacids() (in module padua.analysis)
(in module padua.visualize)
N
numeric() (in module padua.process)
P
padua.analysis (module)
padua.annotations (module)
padua.filters (module)
padua.imputation (module)
padua.io (module)
padua.normalization (module)
padua.process (module)
padua.utils (module)
padua.visualize (module)
pca() (in module padua.analysis)
(in module padua.visualize)
plot_cov_ellipse() (in module padua.visualize)
plot_point_cov() (in module padua.visualize)
pls() (in module padua.imputation)
plsda() (in module padua.analysis)
(in module padua.visualize)
plsr() (in module padua.analysis)
(in module padua.visualize)
Q
quality_control() (in module padua.visualize)
qvalues() (in module padua.utils)
R
rankintensity() (in module padua.visualize)
read_maxquant() (in module padua.io)
read_perseus() (in module padua.io)
remove_columns_containing() (in module padua.filters)
remove_columns_matching() (in module padua.filters)
remove_contaminants() (in module padua.filters)
remove_only_identified_by_site() (in module padua.filters)
remove_potential_contaminants() (in module padua.filters)
remove_reverse() (in module padua.filters)
S
search() (in module padua.filters)
sitespeptidesproteins() (in module padua.analysis)
(in module padua.visualize)
strip_index_labels() (in module padua.process)
subtract_column_median() (in module padua.normalization)
T
transform_expression_columns() (in module padua.process)
V
venn() (in module padua.visualize)
volcano() (in module padua.visualize)
W
write_perseus() (in module padua.io)
write_phosphopath() (in module padua.io)
write_phosphopath_ratio() (in module padua.io)
write_r() (in module padua.io)
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