Index

A | B | C | E | F | G | H | M | N | P | Q | R | S | T | V | W

A

apply_experimental_design() (in module padua.process)

B

box() (in module padua.visualize)
build_combined_label() (in module padua.utils)
build_index_from_design() (in module padua.process)
build_index_from_labels() (in module padua.process)

C

calculate_s0_curve() (in module padua.utils)
chunks() (in module padua.utils)
column_correlations() (in module padua.visualize)
combine_expression_columns() (in module padua.process)
comparedist() (in module padua.visualize)
correlation() (in module padua.analysis)
(in module padua.visualize)

E

enrichment() (in module padua.analysis)
(in module padua.visualize)
expand_side_table() (in module padua.process)

F

filter_localization_probability() (in module padua.filters)
find_nearest_idx() (in module padua.utils)
fold_columns_to_rows() (in module padua.process)

G

gaussian() (in module padua.imputation)
get_index_list() (in module padua.utils)
get_protein_id() (in module padua.utils)
get_protein_id_list() (in module padua.utils)
get_protein_ids() (in module padua.utils)
get_shortstr() (in module padua.utils)
get_unique_indices() (in module padua.process)
go_enrichment() (in module padua.analysis)

H

hierarchical() (in module padua.visualize)
hierarchical_match() (in module padua.utils)

M

minimum_valid_values_in_any_group() (in module padua.filters)
modificationlocalization() (in module padua.visualize)
modifiedaminoacids() (in module padua.analysis)
(in module padua.visualize)

N

numeric() (in module padua.process)

P

padua.analysis (module)
padua.annotations (module)
padua.filters (module)
padua.imputation (module)
padua.io (module)
padua.normalization (module)
padua.process (module)
padua.utils (module)
padua.visualize (module)
pca() (in module padua.analysis)
(in module padua.visualize)
plot_cov_ellipse() (in module padua.visualize)
plot_point_cov() (in module padua.visualize)
pls() (in module padua.imputation)

Q

qvalues() (in module padua.utils)

R

rankintensity() (in module padua.visualize)
read_maxquant() (in module padua.io)
read_perseus() (in module padua.io)
remove_columns_containing() (in module padua.filters)
remove_columns_matching() (in module padua.filters)
remove_only_identified_by_site() (in module padua.filters)
remove_potential_contaminants() (in module padua.filters)
remove_reverse() (in module padua.filters)

S

search() (in module padua.filters)
sitespeptidesproteins() (in module padua.analysis)
(in module padua.visualize)
strip_index_labels() (in module padua.process)
subtract_column_median() (in module padua.normalization)

T

transform_expression_columns() (in module padua.process)

V

venn() (in module padua.visualize)
volcano() (in module padua.visualize)

W

write_perseus() (in module padua.io)
write_phosphopath() (in module padua.io)
write_phosphopath_ratio() (in module padua.io)
write_r() (in module padua.io)